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Ananas

Joined: Aug 29 09
Posts: 56
ID: 17736
Credit: 2,500,425
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Message 5464 - Posted 20 Oct 2009 0:51:05 UTC
Last modified: 20 Oct 2009 1:32:24 UTC

20.10.2009 02:47:15 Started download of 1gj6_88_mod0014trypsin_625_3803.inp
20.10.2009 02:47:17 Finished download of lpdb_trypsin.prm
20.10.2009 02:47:17 [error] MD5 check failed for lpdb_trypsin.prm
20.10.2009 02:47:17 [error] expected d41d8cd98f00b204e9800998ecf8427e, got 483342111afc873e78b014e0fdaac5e6
20.10.2009 02:47:17 [error] Checksum or signature error for lpdb_trypsin.prm
20.10.2009 02:47:19 Finished download of 1gj6_88_mod0014trypsin_625_3803.inp
20.10.2009 02:48:19 Sending scheduler request: To fetch work. Requesting 931 seconds of work, reporting 1 completed tasks
20.10.2009 02:48:24 Scheduler request succeeded: got 1 new tasks
20.10.2009 02:48:26 Started download of lpdb_trypsin.prm
20.10.2009 02:48:26 Started download of 1gj6_87_mod0014trypsin_625_3803.inp
20.10.2009 02:48:28 Finished download of lpdb_trypsin.prm
20.10.2009 02:48:28 [error] MD5 check failed for lpdb_trypsin.prm
20.10.2009 02:48:28 [error] expected d41d8cd98f00b204e9800998ecf8427e, got 483342111afc873e78b014e0fdaac5e6
20.10.2009 02:48:28 [error] Checksum or signature error for lpdb_trypsin.prm


It seems to be the same file in all (> 20) errors, I disabled work fetch for now.

edit : removed my previous p.s. as I made a mistake when I checked the file (checked on the wrong box)

Copying the file from a different host did the job, it's working now.
ID: 5464 | Rating: 0 | rate: Rate + / Rate - Report as offensive
Profile Trilce Estrada
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Joined: Sep 19 06
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Message 5488 - Posted 28 Oct 2009 0:09:00 UTC

Please reset the project, this happens sometimes when we start a new batch of workunits (with a different protein)

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Matthias Lehmkuhl

Joined: Sep 9 08
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Message 5664 - Posted 19 Jan 2010 19:12:30 UTC

got this error today after reseting the project and deleting all remaining files
19/01/2010 19:48:35 Docking Started download of lpdb_p38alpha.prm
19/01/2010 19:48:41 Docking Finished download of lpdb_p38alpha.prm
19/01/2010 19:48:41 Docking [error] MD5 check failed for lpdb_p38alpha.prm
19/01/2010 19:48:41 Docking [error] expected d41d8cd98f00b204e9800998ecf8427e, got d9a81b8e1a6c8647a88852f9e0af09a4
19/01/2010 19:48:41 Docking [error] Checksum or signature error for lpdb_p38alpha.prm
19/01/2010 19:50:59 Docking Started download of lpdb_p38alpha.prm
19/01/2010 19:51:03 Docking Finished download of lpdb_p38alpha.prm

I had reset the project (and deleted all remaining files manually) while crashing 3 results
hostid=8234
Error message
Outcome: Client error
Client state: Compute error
Exit status: 1 (0x1)

stderr out:
<core_client_version>6.10.18</core_client_version>
<![CDATA[
<message>
Unzul�ssige Funktion. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
Calling BOINC init.
Starting charmm run (initial or from checkpoint)...
ERROR - Charmm exited with code 1.
Calling BOINC finish.
called boinc_finish

</stderr_txt>
]]>


by now I found the error, the file lpdb_p38alpha.rpm in my trash has 0 Bytes, the new downloaded file is 242 KB.
So there where missing data to compute the results.
____________
Matthias

ID: 5664 | Rating: 0 | rate: Rate + / Rate - Report as offensive

Message boards : Number crunching : Checksum errors

Database Error
: The MySQL server is running with the --read-only option so it cannot execute this statement 
array(3) {
  [0]=>
  array(7) {
    ["file"]=>
    string(47) "/boinc/projects/docking/html_v2/inc/db_conn.inc"
    ["line"]=>
    int(97)
    ["function"]=>
    string(8) "do_query"
    ["class"]=>
    string(6) "DbConn"
    ["object"]=>
    object(DbConn)#8 (2) {
      ["db_conn"]=>
      resource(66) of type (mysql link persistent)
      ["db_name"]=>
      string(7) "docking"
    }
    ["type"]=>
    string(2) "->"
    ["args"]=>
    array(1) {
      [0]=>
      &string(51) "update DBNAME.thread set views=views+1 where id=476"
    }
  }
  [1]=>
  array(7) {
    ["file"]=>
    string(48) "/boinc/projects/docking/html_v2/inc/forum_db.inc"
    ["line"]=>
    int(60)
    ["function"]=>
    string(6) "update"
    ["class"]=>
    string(6) "DbConn"
    ["object"]=>
    object(DbConn)#8 (2) {
      ["db_conn"]=>
      resource(66) of type (mysql link persistent)
      ["db_name"]=>
      string(7) "docking"
    }
    ["type"]=>
    string(2) "->"
    ["args"]=>
    array(3) {
      [0]=>
      object(BoincThread)#3 (16) {
        ["id"]=>
        string(3) "476"
        ["forum"]=>
        string(1) "2"
        ["owner"]=>
        string(5) "17736"
        ["status"]=>
        string(1) "0"
        ["title"]=>
        string(15) "Checksum errors"
        ["timestamp"]=>
        string(10) "1263928350"
        ["views"]=>
        string(3) "122"
        ["replies"]=>
        string(1) "2"
        ["activity"]=>
        string(21) "5.420946816432301e-79"
        ["sufferers"]=>
        string(1) "0"
        ["score"]=>
        string(1) "0"
        ["votes"]=>
        string(1) "0"
        ["create_time"]=>
        string(10) "1255999865"
        ["hidden"]=>
        string(1) "0"
        ["sticky"]=>
        string(1) "0"
        ["locked"]=>
        string(1) "0"
      }
      [1]=>
      &string(6) "thread"
      [2]=>
      &string(13) "views=views+1"
    }
  }
  [2]=>
  array(7) {
    ["file"]=>
    string(63) "/boinc/projects/docking/html_v2/user/community/forum/thread.php"
    ["line"]=>
    int(184)
    ["function"]=>
    string(6) "update"
    ["class"]=>
    string(11) "BoincThread"
    ["object"]=>
    object(BoincThread)#3 (16) {
      ["id"]=>
      string(3) "476"
      ["forum"]=>
      string(1) "2"
      ["owner"]=>
      string(5) "17736"
      ["status"]=>
      string(1) "0"
      ["title"]=>
      string(15) "Checksum errors"
      ["timestamp"]=>
      string(10) "1263928350"
      ["views"]=>
      string(3) "122"
      ["replies"]=>
      string(1) "2"
      ["activity"]=>
      string(21) "5.420946816432301e-79"
      ["sufferers"]=>
      string(1) "0"
      ["score"]=>
      string(1) "0"
      ["votes"]=>
      string(1) "0"
      ["create_time"]=>
      string(10) "1255999865"
      ["hidden"]=>
      string(1) "0"
      ["sticky"]=>
      string(1) "0"
      ["locked"]=>
      string(1) "0"
    }
    ["type"]=>
    string(2) "->"
    ["args"]=>
    array(1) {
      [0]=>
      &string(13) "views=views+1"
    }
  }
}
query: update docking.thread set views=views+1 where id=476