Time for some news
Message boards : Number crunching : Time for some news
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It's been a month......update please. |
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suguruhirahara
Forum moderator Volunteer tester 
Joined: Sep 13 06 Posts: 282 ID: 15 Credit: 56,614 RAC: 0 |
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I hope too. Otherwise we have no choice expect seeing this project dead...
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ID:
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I hope too. Otherwise we have no choice expect seeing this project dead... Not dead, just on the road I think. Wait 'til next year, don't give up so fast. ____________ Gruesse vom Saenger For questions about Boinc look in the BOINC-Wiki |
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I hope too. Otherwise we have no choice expect seeing this project dead... Yup. Still "under construction" but not dead I bet... ;-) ____________ Bribe me with Lasagna!! :-) |
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ID:
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I keep watching. The life sciences section of BOINC has certainly seen some attrition this year.
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Andre Kerstens
Forum moderator Project tester Volunteer tester 
Joined: Sep 11 06 Posts: 749 ID: 1 Credit: 15,199 RAC: 0 |
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Not dead yet, but slow... Michela has found a student sysadmin who his helping her out setting up the machines, but the last couple of weeks have been mostly final exams so you know how that goes. I've been pretty busy with my own new job, so couldn't spent much time debugging the new docking server myself: there are some problems getting the web site up and there are some firewall issues at UDel it seems as we can't get through to the server. The sysadmin (Jason) is finding out where this firewall is hiding out. Michela is also busy with hiring a new postdoc who is going to be busy learning all about docking@home and work on the computer science research in the project. Hopefully that new person will be here somewhere in January. Then of course there's still Trilce, Michela's PhD student who moved to DE with us, who also had a lot of studying to do the last months. She's working on genetic algorithm stuff to make D@H (and eventually BOINC) more smarter in scheduling jobs.
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ID:
3639 | Rating: 1
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Thanks a lot for the update, Andre! We crunchers need that from time to time when it's getting too silent in here... :-)
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Thanks for the update Andre.
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David Ball
Forum moderator Volunteer tester 
Joined: Sep 18 06 Posts: 274 ID: 115 Credit: 1,634,401 RAC: 0 |
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Thanks for the Update, Andre. It sounds like things are moving along.
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Andre Kerstens
Forum moderator Project tester Volunteer tester
Joined: Sep 11 06 Posts: 749 ID: 1 Credit: 15,199 RAC: 0 |
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Hello everybody! We've just moved over the D@H web site to the new URL http://docking.cis.udel.edu. See the news on the front page for more details. A small first step, but still a step :-)
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ID:
3650 | Rating: 0
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Woooooo-hooooo! Just saw it with delight! :-)))
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Andre Kerstens
Forum moderator Project tester Volunteer tester
Joined: Sep 11 06 Posts: 749 ID: 1 Credit: 15,199 RAC: 0 |
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Fixed the scheduler. You should be able to connect your boinc client to D@H's new URL (http://docking.cis.udel.edu) now. You won't get any work yet though :-)
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ID:
3653 | Rating: 0
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Fixed the scheduler. You should be able to connect your boinc client to D@H's new URL (http://docking.cis.udel.edu) now. You won't get any work yet though :-) Can confirm re-attaching works nicely! :-) ____________ Bribe me with Lasagna!! :-) |
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ID:
3654 | Rating: 0
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Fixed the scheduler. You should be able to connect your boinc client to D@H's new URL (http://docking.cis.udel.edu) now. You won't get any work yet though :-) Ditto. ____________ 
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ID:
3655 | Rating: 0
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Same here
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ID:
3657 | Rating: 0
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Re-connected. The web RPC interface is working as well, so I've updated our teams stats grabber.
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ID:
3658 | Rating: 0
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Re-connecting... and done... ;-)
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3659 | Rating: 0
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Andre Kerstens
Forum moderator Project tester Volunteer tester
Joined: Sep 11 06 Posts: 749 ID: 1 Credit: 15,199 RAC: 0 |
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Looks like we might be able to generate some work after X-mas and I guess you guys are the first to get it :-) Probably some of the old utep stuff first for testing and as soon as Michela can get her students to work on this, new docking problems will follow.
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ID:
3663 | Rating: 0
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PS Good point about the stats, didn't think of those... what's the best way of reaching all of the stats sites to let them know about the new url? First way, don't use a re-direct from UTEP for the /stats directory or RPC's. They will very quickly note that their stats are not updating and will come to the project page to see if the project is down - there they will see it is not and upon investigating, will see the new URL in the news. Alternatively, do use a re-direct and nobody will notice it ever changed - poor solution but effective. The RSS feed is another source. Most teams/stats sites have at least one person subscribed to all the project RSS feeds. I saw the current news is already front page at BOINCStats.com. Forum post in a few of the big active projects grabs the attention of a few "regulars" who will bump their team managers. Grape vine works faster then light. I don't think it is a real problem Andre, the stats sites pride themselves in getting the numbers to the punters, they'll find out. ____________ Wave upon wave of demented avengers march cheerfully out of obscurity into the dream. 
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ID:
3664 | Rating: 0
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I just posted a quick blurb at BOINCSynergy.
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ID:
3665 | Rating: 0
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All hosts re-attached.
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ID:
3666 | Rating: 0
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Woo Hoo!!
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ID:
3667 | Rating: 0
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David Ball
Forum moderator Volunteer tester
Joined: Sep 18 06 Posts: 274 ID: 115 Credit: 1,634,401 RAC: 0 |
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Yippee!!! I'm re-attached on my main machine. I'm glad to see things working again. I hope you got SOME rest over the holidays, Andre.
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ID:
3675 | Rating: 0
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suguruhirahara
Forum moderator Volunteer tester
Joined: Sep 13 06 Posts: 282 ID: 15 Credit: 56,614 RAC: 0 |
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I'm waiting for workunits already...
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ID:
3676 | Rating: 0
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Just having a look at the Docking web site and found that I can now reattach.
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ID:
3678 | Rating: 0
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I detached and re-attached with the new URL some of my PC's a mixture of 32 bit XP and 64 bit Linux. Hope for some work in the near future,
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ID:
3683 | Rating: 0
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Looks like we might be able to generate some work after X-mas and I guess you guys are the first to get it :-) Probably some of the old utep stuff first for testing and as soon as Michela can get her students to work on this, new docking problems will follow. Live it to the users, word gets around fast. Willy of BOINCstats updated on December 24th. I just left a post on MundayWeb as I did not see Neil had been notified yet. I do not know all the other stat sites, but word will get around quickly. Happy New Year. |
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ID:
3687 | Rating: 0
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suguruhirahara
Forum moderator Volunteer tester
Joined: Sep 13 06 Posts: 282 ID: 15 Credit: 56,614 RAC: 0 |
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Hmm... any news around the project?
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ID:
3707 | Rating: 0
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Sorry for being absent for some time. Michela is training a new student, Abel Licon, who will be devoting most of his time to D@H and is currently getting up to speed on things (setting up a boinc server, compiling charmm, etc, etc). I'm hoping things will be happening fairly soon now!
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ID:
3714 | Rating: 0
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suguruhirahara
Forum moderator Volunteer tester
Joined: Sep 13 06 Posts: 282 ID: 15 Credit: 56,614 RAC: 0 |
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Sorry for being absent for some time. Michela is training a new student, Abel Licon, who will be devoting most of his time to D@H and is currently getting up to speed on things (setting up a boinc server, compiling charmm, etc, etc). I'm hoping things will be happening fairly soon now! Hi andre, I'm relieved that this project wouldn't be ended due to a cut of funding for example ;) suguruhirahara ____________ 
I'm a volunteer participant; my views are not necessarily those of Docking@Home or its participating institutions. |
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ID:
3715 | Rating: 0
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Sorry for being absent for some time. Michela is training a new student, Abel Licon, who will be devoting most of his time to D@H and is currently getting up to speed on things (setting up a boinc server, compiling charmm, etc, etc). I'm hoping things will be happening fairly soon now! Mr Test User / Andre, you appear to have lost your number 1 ID, it is now 371. It would seem that you are not using your correct account. No avatar and no ID of 1. ____________ 
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ID:
3716 | Rating: 0
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Conan... it also looks like your avatar got lost...
The requested URL /user_profile/images/100_avatar.jpg was not found on this server. ;-) ____________ 
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ID:
3717 | Rating: 0
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Andre Kerstens
Forum moderator Project tester Volunteer tester
Joined: Sep 11 06 Posts: 749 ID: 1 Credit: 15,199 RAC: 0 |
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Let me see if this gets me back to my old self...
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ID:
3727 | Rating: 0
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Let me see if this gets me back to my old self... Hey Andre _o/ |
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ID:
3731 | Rating: 0
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Andre Kerstens
Forum moderator Project tester Volunteer tester
Joined: Sep 11 06 Posts: 749 ID: 1 Credit: 15,199 RAC: 0 |
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Hey Nicolas, good to see you back too :-)
Let me see if this gets me back to my old self... ____________ D@H the greatest project in the world... a while from now! |
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ID:
3736 | Rating: 0
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Hey Nicolas, good to see you back too :-) Wow. Three in a row. =;^) ____________ Dublin, CA Team SETI.USA |
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ID:
3741 | Rating: 0
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Andre Kerstens
Forum moderator Project tester Volunteer tester
Joined: Sep 11 06 Posts: 749 ID: 1 Credit: 15,199 RAC: 0 |
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Yeah, my browser was not responding and then it crashed.... then again I guess it was sending my responses, just not telling me :-)
Hey Nicolas, good to see you back too :-) ____________ D@H the greatest project in the world... a while from now! |
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ID:
3742 | Rating: 0
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ID:
3930 | Rating: 0
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David Ball
Forum moderator Volunteer tester
Joined: Sep 18 06 Posts: 274 ID: 115 Credit: 1,634,401 RAC: 0 |
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Any news for June ???
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ID:
3933 | Rating: 0
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hi all,
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ID:
3934 | Rating: 0
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Bring it on !
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ID:
3935 | Rating: 0
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suguruhirahara
Forum moderator Volunteer tester
Joined: Sep 13 06 Posts: 282 ID: 15 Credit: 56,614 RAC: 0 |
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hi all, Let us know when the site of docktest becomes available :-) suguruhirahara ____________
I'm a volunteer participant; my views are not necessarily those of Docking@Home or its participating institutions. |
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ID:
3936 | Rating: 0
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hi,
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ID:
3937 | Rating: 0
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hi, Hi Arun, thank you for the update and good news! By the way, I would like to join docktest@home. Could you please send me an invitation code? |
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ID:
3938 | Rating: 0
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Yes, very good news!!! :-)))
... By the way, I would like to join docktest@home. I wouldn't say no to an invitation either!! *grin* EDIT: Could do some testing on Win x64 or Linux 64-bit. ;-) ____________ Bribe me with Lasagna!! :-) |
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ID:
3939 | Rating: 0
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Another eager to put windows and mac-intel platforms on docktest@home :-D |
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ID:
3940 | Rating: 0
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suguruhirahara
Forum moderator Volunteer tester
Joined: Sep 13 06 Posts: 282 ID: 15 Credit: 56,614 RAC: 0 |
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As I'll travel in Czech from tomorrow to the next Tuesday, unfortunately I cannot get my host attached to the new project...
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ID:
3941 | Rating: 0
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Right now we are testing by distributing work for Docking@home and some people connected to the project are getting work. Checkout the new screensaver and give us your comments (Sorry, the screensaver is for windows only now). |
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ID:
3942 | Rating: 0
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Right now we are testing by distributing work for Docking@home and some people connected to the project are getting work. Checkout the new screensaver and give us your comments (Sorry, the screensaver is for windows only now). Hello! Congratulation; so far running for about 2 minutes estimated by start 2 and a half hour, progress bar working nicely! But .... When trying to show /looking at the graphics pitch black during the running time for the wu! The same on both of my pc's that have got work! Hope this will help You a bit on the way to a perfect project! Nice start anyway! Greetings from Hans Sveen Oslo, Norway |
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ID:
3943 | Rating: 0
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At first it is going to take time to build the grid and show the graphics. If you don't see any graphics during the whole execution of the workunit, please tell us. This is what should happen * When you click on show graphics you should get a screen that has low level and high tab. And sections for Protein, Ligand, Complex and resources. * Protein (click on protein) will be blank while the grid is being built, and the ligand (click on ligand) will be blank until it is loaded. When both of them are loaded, you should see them docking. To be clear, are you able to see anything or the whole screen is blank ? cheers Arun |
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ID:
3944 | Rating: 0
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Right now we are testing by distributing work for Docking@home and some people connected to the project are getting work. Checkout the new screensaver and give us your comments (Sorry, the screensaver is for windows only now). Noticed the same behaviour (especially the 'blank' screen saver on my P4, Win XP 32-bit). On my dual core lappy (running under Win XP 64 bit) the screensaver shows nicely and I can click all functions in "low level" mode. 
Btw: Found one computational error on that Win x64-lappy: CPU time 244.25 ____________ Bribe me with Lasagna!! :-) |
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ID:
3945 | Rating: 0
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We just created 300 wus, have fun crunching and give us your feedback.
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ID:
3946 | Rating: 0
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Thanks for your feedback. We will look at the error messages and figure it out. |
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ID:
3947 | Rating: 0
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ID:
3948 | Rating: 0
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hi all,
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ID:
3949 | Rating: 0
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David Ball
Forum moderator Volunteer tester
Joined: Sep 18 06 Posts: 274 ID: 115 Credit: 1,634,401 RAC: 0 |
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I posted a couple of responses in the "Screensaver" thread. BTW, resetting the project didn't fix it.
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ID:
3953 | Rating: 0
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Btw: I just noticed on
my XP 64-bit lappy
that checkpointing doesn't work.
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ID:
3955 | Rating: 0
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Same black screensaver as others have reported.
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ID:
3956 | Rating: 0
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hi all, Resetting didn't work, but detaching and re-attaching did the trick! :-))) Saw a nice sreensaver on my P4 . ____________ Bribe me with Lasagna!! :-) |
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ID:
3957 | Rating: 0
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suguruhirahara
Forum moderator Volunteer tester
Joined: Sep 13 06 Posts: 282 ID: 15 Credit: 56,614 RAC: 0 |
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I got my host attached to the project completely new, and I noticed no problem with the workunits.
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ID:
3959 | Rating: 0
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Yes re-attaching worked for me too. Also I reattached 2 other hosts successfully via BoincView. I'll try the problematic host again just for grins, after it's finished its current wu. |
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ID:
3961 | Rating: 0
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Abel
Forum moderator Project administrator Project developer Project tester 
Joined: Sep 15 06 Posts: 30 ID: 108 Credit: 167,489 RAC: 0 |
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All, please post screen saver problems to the screensaver thread, just to keep things together. |
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ID:
3965 | Rating: 0
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I see that the mac applications (both PPC and Intel) have not been updated like the rest. Does that mean that the tasks crunched by macs will still have the validation problem? Should we even try crunching them with Macs at this time?
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ID:
3970 | Rating: 0
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I see that the mac applications (both PPC and Intel) have not been updated like the rest. Does that mean that the tasks crunched by macs will still have the validation problem? Should we even try crunching them with Macs at this time? Try couple of WUs on your mac and see. It may work, as the HR stuff is handled by the server. |
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ID:
3976 | Rating: 0
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Try couple of WUs on your mac and see. It may work, as the HR stuff is handled by the server. This was with a intel mac, same with a PPC mac: Wed Jun 4 18:16:17 2008||Attaching to http://docking.cis.udel.edu/ Wed Jun 4 18:16:17 2008|http://docking.cis.udel.edu/|[sched_op_debug] Starting scheduler request Wed Jun 4 18:16:17 2008|http://docking.cis.udel.edu/|[sched_op_debug] Fetching master file Wed Jun 4 18:16:23 2008|http://docking.cis.udel.edu/|[sched_op_debug] Got master file; parsing Wed Jun 4 18:16:23 2008|http://docking.cis.udel.edu/|[sched_op_debug] Found 1 scheduler URLs in master file Wed Jun 4 18:16:23 2008|http://docking.cis.udel.edu/|Master file download succeeded Wed Jun 4 18:16:28 2008|http://docking.cis.udel.edu/|[sched_op_debug] Starting scheduler request Wed Jun 4 18:16:28 2008|http://docking.cis.udel.edu/|Sending scheduler request: Project initialization. Requesting 1 seconds of work, reporting 0 completed tasks Wed Jun 4 18:16:33 2008|Docking@Home|Scheduler request succeeded: got 0 new tasks Wed Jun 4 18:16:33 2008|Docking@Home|[sched_ops_debug] Server version 603 Wed Jun 4 18:16:33 2008|Docking@Home|Message from server: No work sent Wed Jun 4 18:16:33 2008|Docking@Home|Message from server: Charmm with screensaver is not available for your type of computer. Wed Jun 4 18:16:33 2008|Docking@Home|Project requested delay of 86400.000000 seconds Wed Jun 4 18:16:33 2008|Docking@Home|New host venue: home Wed Jun 4 18:16:33 2008|Docking@Home|[sched_op_debug] Deferring communication for 1 min 0 sec Wed Jun 4 18:16:33 2008|Docking@Home|[sched_op_debug] Reason: no work from project Wed Jun 4 18:16:33 2008|Docking@Home|[sched_op_debug] Deferring communication for 1 days 0 hr 0 min 0 sec Wed Jun 4 18:16:33 2008|Docking@Home|[sched_op_debug] Reason: requested by project ____________ Dublin, CA Team SETI.USA |
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ID:
3979 | Rating: 0
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Try couple of WUs on your mac and see. It may work, as the HR stuff is handled by the server. I get the same error on my Linux machines, although somehow I did get a single WU on the 4th on one Linux computer that completed in 298 seconds as valid but pending, now I can get no work. ____________
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ID:
3983 | Rating: 0
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Linux and mac users pls try again & give us your feedback. There are more workunits. Thanks. |
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ID:
3985 | Rating: 0
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Linux and mac users pls try again & give us your feedback. There are more workunits. Thanks. Downloaded work okay this time. No problems. ____________ Dublin, CA Team SETI.USA |
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ID:
3986 | Rating: 0
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FYI, the server is issuing tasks from the same WU to the same machine. Here is an example:
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ID:
3988 | Rating: 0
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Gee I'm envious, my Intel Mac crashed 3 wus instantly.
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ID:
3991 | Rating: 0
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Well... I have to say... the screensaver looks nice.
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ID:
3995 | Rating: 0
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Just created more workunits. We are working on getting the screensaver for linux next. Thanks for your feedback.
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ID:
4005 | Rating: 0
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Message boards : Number crunching : Time for some news
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string(11) "BoincThread"
["object"]=>
object(BoincThread)#3 (16) {
["id"]=>
string(3) "277"
["forum"]=>
string(1) "2"
["owner"]=>
string(3) "339"
["status"]=>
string(1) "0"
["title"]=>
string(18) "Time for some news"
["timestamp"]=>
string(10) "1212724594"
["views"]=>
string(4) "3973"
["replies"]=>
string(2) "71"
["activity"]=>
string(22) "5.363303662012999e-103"
["sufferers"]=>
string(1) "0"
["score"]=>
string(1) "0"
["votes"]=>
string(1) "0"
["create_time"]=>
string(10) "1197207842"
["hidden"]=>
string(1) "0"
["sticky"]=>
string(1) "0"
["locked"]=>
string(1) "0"
}
["type"]=>
string(2) "->"
["args"]=>
array(1) {
[0]=>
&string(13) "views=views+1"
}
}
}
query: update docking.thread set views=views+1 where id=277