Is checkpointing supported?
Message boards : Windows : Is checkpointing supported?
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Does the application charmm 5.01 supports checkpointing? If yes, in what timesteps checkpoints are saved?
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33 | Rating: 0
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Yes, checkpointing is enabled. The first time is after we have created the initial grid (usually after 5 mins or so) and after that every time we go through the loop where we change rotation and conformation. It is hard to say what the exact timestep is, because it depends on the lenght of the calculation. Also, the grid at the beginning is always build because we have problems reading it in and reusing it right now. Michela is working on fixing this. So what you are seeing is normal: you stopped at 8.8%, then we recreate the grid (and therefore you see the 5% in the gui), after that we read back the last checkpoint (8.8%) and continue. It could be that you got a shorter wu (15 mins calc) and therefore the 8.8 to 12.6% went fast.
Does the application charmm 5.01 supports checkpointing? If yes, in what timesteps checkpoints are saved? |
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37 | Rating: 0
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After restart Boinc the percent status fall back from 29% to 5%. If I have read this right I must running WUs some time while the percent status increasing fast to last checkpoint?
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ID:
152 | Rating: 0
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Hi!
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ID:
2712 | Rating: 0
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Andre Kerstens
Forum moderator Project tester Volunteer tester 
Joined: Sep 11 06 Posts: 749 ID: 1 Credit: 15,199 RAC: 0 |
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2 hours at 1%... something must be wrong. Is charmm actually still running? (check your task manager)
Hi! ____________ D@H the greatest project in the world... a while from now! |
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ID:
2714 | Rating: 0
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Yes, it was running. After 3 hours of computing I shut down Boinc (charmm still at 1%), and when I started again it was again the same 1% :(
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ID:
2715 | Rating: 0
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Andre Kerstens
Forum moderator Project tester Volunteer tester
Joined: Sep 11 06 Posts: 749 ID: 1 Credit: 15,199 RAC: 0 |
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Yes, please abort and see if the next one has the same problem. If it does, please let us know and possibly send the file 1tng_mod001_xxx_xxx.inp in the projects/docking.utep.edu subdirectory of your boinc installation to dockingadmin@utep.edu so that we can analyze this more in details. You have to get that file while you're crunching though, since after you abort it, it will be removed by the client.
Yes, it was running. After 3 hours of computing I shut down Boinc (charmm still at 1%), and when I started again it was again the same 1% :( ____________ D@H the greatest project in the world... a while from now! |
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ID:
2717 | Rating: 0
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Message boards : Windows : Is checkpointing supported?
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