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zombie67 [MM]
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Message 1835 - Posted 20 Dec 2006 17:58:53 UTC

I received the script yesterday. I ran it and returned it. But I think there is a problem with the script. I also put these comments in the email, but will also post it here:

%./macInfo.sh
Start gathering system information...
Creating temporary docking directory...
Removing old files if needed...
Acquiring system information
Locating CHARMM executable...
CHARMM executable not found! Please connect to the
Docking@Home project and download at least one workunit.

Writing final system information...
Cleaning up temporary files...


As you can see, it was unable to find CHARMM, and asked me to download one. I already have 4 units downloaded, as well as the CHARMM application, as you can see here:

% pwd
/Library/Application Support/BOINC Data/projects/docking.utep.edu
% ls
1tng_mod0001_14732_322678.inp grid_probes.rtf
1tng_mod0001_15183_72322.inp lpdb.prm
1tng_mod0001_15215_178266.inp lpdb_amino.rtf
1tng_mod0001_15259_380905.inp lpdb_probes.prm
charmm_5.2_i686-apple-darwin

Perhaps the script is looking in the wrong location? Let me know if you want me to do anything else.

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Profile Andre Kerstens
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Message 1837 - Posted 20 Dec 2006 18:23:27 UTC - in response to Message ID 1835 .

Hi Zombie,

Thanks for the feedback; although we read your feedback in the email this is a good place to post it as well as it will be easier to find back. Approx. 8 people have send back their output files and it seems some experienced the same problem as you and for some it worked as it should. The part of the script that didn't seem to work for you and some others is where we try to find out the versions of the dynamic libraries that charmm uses. If you want you can run the following line manually in a terminal and post the output here:

otool -L "/Library/Application Support/BOINC Data/projects/docking.utep.edu/charmm_5.2_i686-apple-darwin"

The path to the binary in between quotes should be on one line and not broken up like it seems here.

Thanks
Andre

I received the script yesterday. I ran it and returned it. But I think there is a problem with the script. I also put these comments in the email, but will also post it here:

%./macInfo.sh
Start gathering system information...
Creating temporary docking directory...
Removing old files if needed...
Acquiring system information
Locating CHARMM executable...
CHARMM executable not found! Please connect to the
Docking@Home project and download at least one workunit.

Writing final system information...
Cleaning up temporary files...


As you can see, it was unable to find CHARMM, and asked me to download one. I already have 4 units downloaded, as well as the CHARMM application, as you can see here:

% pwd
/Library/Application Support/BOINC Data/projects/docking.utep.edu
% ls
1tng_mod0001_14732_322678.inp grid_probes.rtf
1tng_mod0001_15183_72322.inp lpdb.prm
1tng_mod0001_15215_178266.inp lpdb_amino.rtf
1tng_mod0001_15259_380905.inp lpdb_probes.prm
charmm_5.2_i686-apple-darwin

Perhaps the script is looking in the wrong location? Let me know if you want me to do anything else.


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Profile Andre Kerstens
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Message 1838 - Posted 20 Dec 2006 18:24:12 UTC

Created this thread to make space for the results of the script we send out.
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zombie67 [MM]
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Message 1839 - Posted 20 Dec 2006 18:35:48 UTC - in response to Message ID 1837 .

Approx. 8 people have send back their output files and it seems some experienced the same problem as you and for some it worked as it should. The part of the script that didn't seem to work for you and some others is where we try to find out the versions of the dynamic libraries that charmm uses. If you want you can run the following line manually in a terminal and post the output here:

otool -L "/Library/Application Support/BOINC Data/projects/docking.utep.edu/charmm_5.2_i686-apple-darwin"


Here ya go:

% otool -L "/Library/Application Support/BOINC Data/projects/docking.utep.edu/charmm_5.2_i686-apple-darwin"
/Library/Application Support/BOINC Data/projects/docking.utep.edu/charmm_5.2_i686-apple-darwin:
/usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version 7.4.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 88.1.6)

Let me know if there is anything else I can do.
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Message 1846 - Posted 21 Dec 2006 14:35:40 UTC - in response to Message ID 1838 .

Created this thread to make space for the results of the script we send out.

I couldn't get it to work on my computer.

s-computer:~ Bill$ % otool -L "/Library/Application Support/BOINC Data/projects/docking.utep.edu/charmm_5.2_i686-apple-darwin"
-bash: fg: %: no such job

But I don't know Jack about terminal. I got the same error message about the Charmm being missing when I did the first script.
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Message 1847 - Posted 21 Dec 2006 16:20:57 UTC - in response to Message ID 1846 .

You run the right command, but leave off the % sign. That's zombie's prompt. Run this:

otool -L "/Library/Application Support/BOINC Data/projects/docking.utep.edu/charmm_5.2_i686-apple-darwin"

Thanks
Andre

PS Make sure it's on one line and not two as depicted in the one above

Created this thread to make space for the results of the script we send out.

I couldn't get it to work on my computer.

s-computer:~ Bill$ % otool -L "/Library/Application Support/BOINC Data/projects/docking.utep.edu/charmm_5.2_i686-apple-darwin"
-bash: fg: %: no such job

But I don't know Jack about terminal. I got the same error message about the Charmm being missing when I did the first script.


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Profile Billy
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Message 1848 - Posted 21 Dec 2006 19:20:22 UTC - in response to Message ID 1847 .
Last modified: 21 Dec 2006 19:21:02 UTC


I ran it but got an error message,

$ otool -L "/Library/Application Support/BOINC Data/projects/docking.utep.edu/charmm_5.2_i686-apple-darwin"
-bash: otool: command not found

I don't know terminal. It may be that I am not the owner of the computer, but a user with admin privileges. Boinc is in the other directory perhaps?

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Message 1853 - Posted 22 Dec 2006 17:50:33 UTC - in response to Message ID 1848 .

Aha, maybe I start to understand why for some people this part of the info is missing: otool is missing and I now realize that this command might only be available if the Xcode software is installed (I'm not 100% sure though). We'll come back to this after some more investigation.

AK


I ran it but got an error message,

$ otool -L "/Library/Application Support/BOINC Data/projects/docking.utep.edu/charmm_5.2_i686-apple-darwin"
-bash: otool: command not found

I don't know terminal. It may be that I am not the owner of the computer, but a user with admin privileges. Boinc is in the other directory perhaps?


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zombie67 [MM]
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Message 1977 - Posted 7 Jan 2007 17:04:42 UTC

Hello again. Any progress on this? Are there plans to send out scripts again?
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Message 1980 - Posted 8 Jan 2007 3:01:40 UTC - in response to Message ID 1977 .

Memo is doing the analysis of the results. I hope he will have something by the end of the week.

AK

Hello again. Any progress on this? Are there plans to send out scripts again?


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Message 2331 - Posted 30 Jan 2007 0:28:31 UTC

The results of the analysis of the mac script we have send out a while ago can be found here . This basically puts us back at square one as the platforms we are running on basically all have the same characteristics (hardware and software-wise). We will keep on researching what is causing the divergences on the Macs.

Thanks for all of your help.
Andre
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Message boards : Macintosh : macInfo script results

Database Error
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