Can you give us a science update?
Message boards : Docking@Home Science : Can you give us a science update?
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Hello.
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6072 | Rating: 0
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hello? |
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6081 | Rating: 0
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Hi,
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6097 | Rating: 0
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If they heading towards GPU crunching then I might just look for another non-GPU project!!! |
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6098 | Rating: 0
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If they heading towards GPU crunching then I might just look for another non-GPU project!!! Try World community grid. Thanks for the links _heinz |
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6108 | Rating: 0
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Hmmm science update is indeed quite rare here...
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ID:
6124 | Rating: 0
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While exciting the FENZI work is not about the docking at home client. I started contributing about 2 years ago to this project as docking is a challenging area of research and I'd hoped that interesting lessons learned might come from this including, but not limited to, improved force fields that might account for additional interaction types that the current CHARMM/AMBER type libraries don't account for.
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6129 | Rating: 0
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Up !
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6139 | Rating: 0
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Only news is I'm up to 74 nodes that are helping Rosetta since the docking forums are so quiet. |
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ID:
6159 | Rating: 0
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Michela
Forum moderator Project administrator Project developer Project tester Project scientist 
Joined: Sep 13 06 Posts: 163 ID: 10 Credit: 97,083 RAC: 0 |
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Yes, I know, we have been quite. It is time for a new newsletter from D@H. We are working on it :-)
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6221 | Rating: 0
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Yes, I know, we have been quite. It is time for a new newsletter from D@H. We are working on it :-) please update your date from the news (server), since 36 days its 2011, not 2010 ;) |
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6226 | Rating: 0
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Michela
Forum moderator Project administrator Project developer Project tester Project scientist
Joined: Sep 13 06 Posts: 163 ID: 10 Credit: 97,083 RAC: 0 |
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Done, thanks :-)
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6229 | Rating: 0
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Bump!
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6304 | Rating: 0
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Michela
Forum moderator Project administrator Project developer Project tester Project scientist
Joined: Sep 13 06 Posts: 163 ID: 10 Credit: 97,083 RAC: 0 |
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There are several papers that have been written with the help of D@H. You can find a list of the papers with the links to the papers at: http://docking.cis.udel.edu/about/project/papers.php
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6306 | Rating: 0
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Ahh !
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6308 | Rating: 0
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Michela
Forum moderator Project administrator Project developer Project tester Project scientist
Joined: Sep 13 06 Posts: 163 ID: 10 Credit: 97,083 RAC: 0 |
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Ahh ! Cross-docking! We are analyzing the data we are collecting right now (great results so far thanks to all of you) and working on another paper. Hopefully we will have the work ready to share with you all for summer. ____________ If you are interested in working on Docking@Home in a great group at UDel, contact me at 'taufer at acm dot org'! |
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6309 | Rating: 0
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Great !
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6310 | Rating: 0
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When is the next paper going to be written for docking?
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ID:
6341 | Rating: 0
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Michela
Forum moderator Project administrator Project developer Project tester Project scientist
Joined: Sep 13 06 Posts: 163 ID: 10 Credit: 97,083 RAC: 0 |
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When is the next paper going to be written for docking? We just submitted a paper to SC11 (http://sc11.supercomputing.org) and a book chapter on D@H. We cannot distribute the manuscripts yet until we have heard back from our reviewers. We should have the SC11 notification in June. We are crossing our fingers! ____________ If you are interested in working on Docking@Home in a great group at UDel, contact me at 'taufer at acm dot org'! |
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6343 | Rating: 0
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Any news?? |
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6381 | Rating: 0
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Michela
Forum moderator Project administrator Project developer Project tester Project scientist
Joined: Sep 13 06 Posts: 163 ID: 10 Credit: 97,083 RAC: 0 |
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Any news?? Yes, but it is not good news. Our most recent work with Docking@Home was reported in a paper we submitted to the Supercomputing conference. The paper got rejected because with too much science and not enough HPC. We really like the work we were able to do with your computing support and we do think it can be very useful for the community. Now we are reviewing the manuscript and plan to submit it to a conference that has a more computation biology scope. I really would love to share with you all the paper to start a discussion with you. Let us review the manuscript, submit it to the conference and as a technical report, then I can share it with you all. Thanks for your help! ____________ If you are interested in working on Docking@Home in a great group at UDel, contact me at 'taufer at acm dot org'! |
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ID:
6385 | Rating: 0
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Any news?? That's sad. Thanks for the update |
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ID:
6389 | Rating: 0
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Thank you for this update.
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ID:
6398 | Rating: 0
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Michela
Forum moderator Project administrator Project developer Project tester Project scientist
Joined: Sep 13 06 Posts: 163 ID: 10 Credit: 97,083 RAC: 0 |
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We received the good news that work in computer science that we accomplished with the support of Docking@Home has been accepted to the high performance computing and communications conference (
http://cse.stfx.ca/~hpcc2011
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6410 | Rating: 0
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Michela
Forum moderator Project administrator Project developer Project tester Project scientist
Joined: Sep 13 06 Posts: 163 ID: 10 Credit: 97,083 RAC: 0 |
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We are almost done with the cross-docking of the HIV complexes. This will give us important data we need for our post-processing for the HIV protein. At the same time we will be finally able to start the cross-docking with a new protein, the trypsin.
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ID:
6472 | Rating: 0
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We are almost done with the cross-docking of the HIV complexes. This will give us important data we need for our post-processing for the HIV protein. At the same time we will be finally able to start the cross-docking with a new protein, the trypsin. Great news ! Thanks !! |
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6473 | Rating: 0
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Any new updates?
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6741 | Rating: 0
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We are almost done with the cross-docking of the HIV complexes. This will give us important data we need for our post-processing for the HIV protein. At the same time we will be finally able to start the cross-docking with a new protein, the trypsin. So, this was 7 months ago, where's the update? I want a science update. Can we make it a regular thing? I'd like a monthly update. Perhaps you could send it in a newsletter format to people's emails. |
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ID:
6765 | Rating: 0
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Thanks for the interest!! We are preparing another newsletter to share with you the scientific problems that we are targeting and the approaches that we have used. It is going to be out soon, stay tuned!
Hello. |
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ID:
6767 | Rating: 0
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So.. where is the newsletter update? |
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ID:
6804 | Rating: 0
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So, this was 7 months ago, where's the update? I want a science update. Can we make it a regular thing? I'd like a monthly update. I think that every month is difficult.... Every 3 month i think it's a good idea! And some news, please, about the long-long-long awaited gpu app... |
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ID:
6805 | Rating: 0
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So, this was 7 months ago, where's the update? I want a science update. Can we make it a regular thing? I'd like a monthly update. It seems that Docking@home is very short on staff. Not entirely unexpected due to the nature of the project. I do totally support the idea of a quarterly update to donors. We donate a lot of money in terms of electricity and hardware to the project, regular updates would go a long way towards validating our continued contributions. |
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ID:
6920 | Rating: 0
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me second that
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ID:
6924 | Rating: 0
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I will probably start to scale back my own efforts due to the lack of communication there are plenty of other projects around that give a lot more feedback than this.
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ID:
6991 | Rating: 0
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Thanks for the interest!! We are preparing another newsletter to share with you the scientific problems that we are targeting and the approaches that we have used. It is going to be out soon, stay tuned! Any news? Are you considering updating the application to the latest version (http://docking.cis.udel.edu/community/forum/thread.php?id=715) ? |
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ID:
7044 | Rating: 0
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... |
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ID:
7084 | Rating: 0
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........???? |
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ID:
7089 | Rating: 0
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I think I'm going to drop Docking@home. This level of a lack of correspondence goes beyond incompetence, and veers right off into a lack of respect for the people who volunteer their resources for this project. As scientists, part of doing studies is teamwork. If you can't even be bothered to check up on this forum and respond to our questions and reasonable requests for updates, than what reason do we have to think you're even analyzing the data our machines provide? |
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ID:
7108 | Rating: 0
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Message boards : Docking@Home Science : Can you give us a science update?
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